PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC29_p9
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TCP
Protein Properties Length: 246aa    MW: 28020.8 Da    PI: 7.8572
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC29_p9genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1073e-33611803115
       TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec......eaesssssasnsssg......kaa 91 
               g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl++ak  ++el+ ++++++s+             ++++ns+++      ++ 
  RrC29_p9  61 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQVYDLQDRLGLSQPSKVIDWLLEAAKDDVDELPPLQFPQESFDldkgkwV-----KQDENSNQDhgfntsQQH 156
               78*************************************************************999996666443332.....333322222345453444 PP

       TCP  92 ksaakskksqksaasalnlakesr 115
                s ++  +++++a+s  nl + ++
  RrC29_p9 157 FSLTNLYNNNNNASSYYNLGHVQH 180
               444488888888888888887554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136930.42462120IPR017887Transcription factor TCP subgroup
PfamPF036344.9E-2962165IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MRSREFDEEE TQAKQERDHN HQLNLNNMLQ QQNQPSSAPT SRQWTSAFRN PRIVRVSRTF  60
GGKDRHSKVC TVRGLRDRRI RLSVPTAIQV YDLQDRLGLS QPSKVIDWLL EAAKDDVDEL  120
PPLQFPQESF DLDKGKWVKQ DENSNQDHGF NTSQQHFSLT NLYNNNNNAS SYYNLGHVQH  180
SLDQPGNNVT VAISNVPYNN NLNLPPPPTM SSLFPTYPSF LGASHHVVDG AGNLQLFSSN  240
ANRNNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1867121155Putative transcription factor PCF6
5zkt_B2e-1867121155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437652.11e-146PREDICTED: transcription factor TCP5-like
SwissprotQ9FME31e-107TCP5_ARATH; Transcription factor TCP5
TrEMBLA0A291I3131e-138A0A291I313_BRARR; TCP17
STRINGBra029344.1-P1e-139(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35762763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.18e-89TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]