PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC29350_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 195aa    MW: 22738.9 Da    PI: 7.1803
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC29350_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF28.61.9e-091152344
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                 i + + r+ tf  R+n ++ K +EL vLCd++ +  i+ +++
  RrC29350_p1 11 ITDGTEREATFNLRKNELIQKLHELHVLCDVDMCAFIYNQSN 52
                 778899****************************99998776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.2E-13160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.769156IPR002100Transcription factor, MADS-box
CDDcd001203.34E-17260No hitNo description
SuperFamilySSF554551.03E-19295IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-6323IPR002100Transcription factor, MADS-box
PfamPF003195.2E-101152IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-62338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-63859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MGKKKMDITY ITDGTEREAT FNLRKNELIQ KLHELHVLCD VDMCAFIYNQ SNPIPEVWPS  60
HSEVKSILEK FEKFSEKKKT CRSVNHEEFL HQMIEKARTK RQKQNAQNKE KYMRELMFAF  120
LSGNMKDLSL NNDDRSELCS FIDKYLKELV HHNNQTLNNP NFEIGQSSSV ALDMNIVQTS  180
IVEAGFLFLS GLQNT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437602.11e-121PREDICTED: agamous-like MADS-box protein AGL80 isoform X1
TrEMBLA0A078HM651e-115A0A078HM65_BRANA; BnaC01g28010D protein
STRINGBo1g088030.11e-115(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28700.13e-52AGAMOUS-like 46