PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2750_p4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family LBD
Protein Properties Length: 237aa    MW: 25659.9 Da    PI: 7.7138
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2750_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26092.93.8e-294102194
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C++dC+++p++     +++q++++ +++k++G++ +l+l+++ p++ r+++++sl+yeA+ r+ +Pv G+vg+++++++  +q+++++
  RrC2750_p4   4 SCNGCRVLRKGCNQDCTIRPCLqwiksADSQANATLFLAKFYGRAGLLNLIESGPDHLRPAIFRSLLYEACGRIVNPVDGSVGLMWSGNWAQCQAAVDA 102
                 6*********************9999767889**************************************************************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.7563109IPR004883Lateral organ boundaries, LOB
PfamPF031954.9E-234101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MRISCNGCRV LRKGCNQDCT IRPCLQWIKS ADSQANATLF LAKFYGRAGL LNLIESGPDH  60
LRPAIFRSLL YEACGRIVNP VDGSVGLMWS GNWAQCQAAV DAILNGLPIT HTPLPSASAS  120
HQIIPPHRTY DIRHVAKDPT TGGDSSESLA LAPRVNGNKA KTQTGRLKRL AETVDYQLGE  180
CSHDTWQLQS SGATHGYGQL ALENVANRRG DPLNQSSNLG CDDQVDTNEV GLELRLG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018455701.11e-175PREDICTED: LOB domain-containing protein 42
SwissprotQ9CA301e-151LBD42_ARATH; LOB domain-containing protein 42
TrEMBLM4CJD11e-172M4CJD1_BRARP; Uncharacterized protein
STRINGBra004315.1-P1e-173(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84632639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.11e-154LOB domain-containing protein 42