PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2654_p2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family LBD
Protein Properties Length: 185aa    MW: 20836.5 Da    PI: 6.6619
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2654_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260114.85.4e-367106199
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aC++lrrkC+ dCv++pyf  eq +++fa+vhk+FGasnv+k l +lp ++r++a+ ++ yeA  r  dPvyG+v++i++lqqq+++l++e++ l+
  RrC2654_p2   7 SCGACRFLRRKCNIDCVFSPYFSYEQaSSHFAAVHKVFGASNVSKHLLSLPLHQRSAAAITISYEALSRKCDPVYGCVAHIFALQQQVMTLQEEIEFLG 105
                 6***********************9978******************************************************************99876 PP

      DUF260  99 e 99 
                 +
  RrC2654_p2 106 T 106
                 5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.5926108IPR004883Lateral organ boundaries, LOB
PfamPF031956.5E-347103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MAGHGSSCGA CRFLRRKCNI DCVFSPYFSY EQASSHFAAV HKVFGASNVS KHLLSLPLHQ  60
RSAAAITISY EALSRKCDPV YGCVAHIFAL QQQVMTLQEE IEFLGTHMAN LSNTTQSRSQ  120
PTNMPEFLNQ MTMDTTTGFI DETVLNNDVG RNCIEGFFTN PEGVLVNHPW FQNMDHYYYA  180
PQHQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3231087111LOB family transfactor Ramosa2.1
5ly0_B2e-3231087111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17259263}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444637.11e-139PREDICTED: LOB domain-containing protein 33
SwissprotQ9LHS81e-100LBD33_ARATH; LOB domain-containing protein 33
TrEMBLA0A291LR261e-130A0A291LR26_BRARR; Transcription factor LBD33
TrEMBLM4CY641e-130M4CY64_BRARP; Uncharacterized protein
STRINGBra009161.1-P1e-131(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.11e-102LOB domain-containing protein 33
Publications ? help Back to Top
  1. Bargmann BO,Birnbaum KD,Brenner ED
    An undergraduate study of two transcription factors that promote lateral root formation.
    Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45
    [PMID:24615800]