PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2618_p3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 332aa    MW: 38375.2 Da    PI: 5.2268
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2618_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.42.2e-07179224555
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +++ r RR+ri ++ +eL +l+P       +Kl+ ae+ + A +Y+k Lq
  RrC2618_p3 179 QSMAARERRRRIAEKTHELTKLIPGG-----QKLNTAEMFQAAAKYVKFLQ 224
                 567889******************86.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.1E-10173234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.728174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-10177234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-5179224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-8180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.15E-4196227No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MPTRQLPSFI FSVSSMDCLS HFFIWEPPIQ LQDCFIPDMD MVIPETDSFF FQTQPQMQFH  60
QPLFKEEAPS QSLLELTDFD SFFDQFLPPQ ETYLPYPKAE LFDETYNFDS FIPTPKRQKL  120
VNSSYHCNTH THTHFPNPNL DFLPEAPVFP EFRVQDFPLV FKAGLGDQDG AKKPKLSSQS  180
MAARERRRRI AEKTHELTKL IPGGQKLNTA EMFQAAAKYV KFLQSQVGIL QMMQTTKKTQ  240
GITDVEIETQ FLLESQAVQE KLSTKEVCLV PCEMVRDLTS EESIWRNLRF LERLTSYCPQ  300
IWLTSFSSKH EALCLLLPVC VLNLCFVLLI SG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896550.0AC189655.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS012M03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018475518.10.0PREDICTED: transcription factor bHLH53-like
SwissprotQ84RD01e-131BH053_ARATH; Transcription factor bHLH53
TrEMBLA0A0D3B4Y11e-172A0A0D3B4Y1_BRAOL; Uncharacterized protein
STRINGBo3g028090.11e-173(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45472552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.11e-132bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]