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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC26004_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | GeBP | ||||||||
Protein Properties | Length: 339aa MW: 38122.2 Da PI: 4.998 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 120 | 1.2e-37 | 134 | 222 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +fqrlw+e+Dei++LqG+idfk++tg sp+dd++a y+ ++k isf+vsk+q+++K+r+LKkK+ +k+k sf+k+hdqk++ l+k iWg RrC26004_p1 134 AFQRLWTEDDEISVLQGMIDFKNDTGNSPYDDTNAYYDHMRKFISFEVSKNQFMDKLRSLKKKYMGKEKP-------SFTKPHDQKSYTLCKFIWG 222 69**************************************************************998776.......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 3.3E-30 | 135 | 222 | IPR007592 | Protein of unknown function DUF573 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MNKKRNPLEN PPAASSSDED EVDSSSAGEE EEHEDGDDAS SSEEEEEDQP KPPSSSAVTI 60 PGKTSDSGSE TETDSDSDTE QPRNQRSGKA ILAKDKSPPP LPKSGTKRPS EETSRDTNSK 120 REKKMGEDSK KPAAFQRLWT EDDEISVLQG MIDFKNDTGN SPYDDTNAYY DHMRKFISFE 180 VSKNQFMDKL RSLKKKYMGK EKPSFTKPHD QKSYTLCKFI WGPDGMGLET SVKSNGVSKK 240 KTNSVKQDPS SPDVDDMRVL VNESDWFERS FLVRGIAGFG VDEHFVKQSW RLVPVETKKI 300 VEEKVKMLQA KEIEFVLHKT QILHEVTSMI AEASKNKPL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013631626.1 | 1e-178 | PREDICTED: mediator-associated protein 1-like | ||||
TrEMBL | A0A0D3BVI2 | 1e-178 | A0A0D3BVI2_BRAOL; Uncharacterized protein | ||||
STRING | Bra021317.1-P | 1e-149 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM313 | 28 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61730.1 | 4e-87 | DNA-binding storekeeper protein-related transcriptional regulator |