PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC26004_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GeBP
Protein Properties Length: 339aa    MW: 38122.2 Da    PI: 4.998
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC26004_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF5731201.2e-37134222297
       DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                  +fqrlw+e+Dei++LqG+idfk++tg sp+dd++a y+ ++k isf+vsk+q+++K+r+LKkK+ +k+k        sf+k+hdqk++ l+k iWg
  RrC26004_p1 134 AFQRLWTEDDEISVLQGMIDFKNDTGNSPYDDTNAYYDHMRKFISFEVSKNQFMDKLRSLKKKYMGKEKP-------SFTKPHDQKSYTLCKFIWG 222
                  69**************************************************************998776.......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.3E-30135222IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MNKKRNPLEN PPAASSSDED EVDSSSAGEE EEHEDGDDAS SSEEEEEDQP KPPSSSAVTI  60
PGKTSDSGSE TETDSDSDTE QPRNQRSGKA ILAKDKSPPP LPKSGTKRPS EETSRDTNSK  120
REKKMGEDSK KPAAFQRLWT EDDEISVLQG MIDFKNDTGN SPYDDTNAYY DHMRKFISFE  180
VSKNQFMDKL RSLKKKYMGK EKPSFTKPHD QKSYTLCKFI WGPDGMGLET SVKSNGVSKK  240
KTNSVKQDPS SPDVDDMRVL VNESDWFERS FLVRGIAGFG VDEHFVKQSW RLVPVETKKI  300
VEEKVKMLQA KEIEFVLHKT QILHEVTSMI AEASKNKPL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013631626.11e-178PREDICTED: mediator-associated protein 1-like
TrEMBLA0A0D3BVI21e-178A0A0D3BVI2_BRAOL; Uncharacterized protein
STRINGBra021317.1-P1e-149(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.14e-87DNA-binding storekeeper protein-related transcriptional regulator