PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC25741_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TCP
Protein Properties Length: 272aa    MW: 28894.8 Da    PI: 7.5628
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC25741_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP138.55.6e-43472152134
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.......... 88 
                  a+ k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++  ++s +ss+s+ s++          
  RrC25741_p1  47 AVTKRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPANFSsLSVSLRSSGSTLSAPppsksvplyg 144
                  689******************************************************************99988888888888666667777788888 PP

          TCP  89 .........................kaaksaakskksqksaasalnlakesrakarararertrekmrikn 134
                                           ++   ++++++ q+ + ++  +++ s+++ r  ++e ++ k++ ++
  RrC25741_p1 145 alglthhhhqyeeqgggafgahlgfHHHHLQPQQQHHQQAQGETIPPHRFSSKRYRDSSKEDDEGKQSESK 215
                  88888888899999999***998765555555555555555556666667777777777776666665554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.6E-4152205IPR005333Transcription factor, TCP
PROSITE profilePS5136928.41153107IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MDLSDDGATA SRHLLDPSLS IVPRSTPPED LTTSSTAPSA AETTSGAVTK RSTKDRHTKV  60
DGRGRRIRMP ALCAARVFQL TRELGHKSDG ETIEWLLQQA EPAIVAATGT GTIPANFSSL  120
SVSLRSSGST LSAPPPSKSV PLYGALGLTH HHHQYEEQGG GAFGAHLGFH HHHLQPQQQH  180
HQQAQGETIP PHRFSSKRYR DSSKEDDEGK QSESKSLKES EPPAGATGAP MWAVAPTNRS  240
AGGNTFWMLP VPTTAAGNQP QPGAVESSSN TN
Functional Description ? help Back to Top
Source Description
UniProtCan specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018456993.11e-138PREDICTED: transcription factor TCP8
SwissprotQ9C5181e-110TCP8_ARATH; Transcription factor TCP8
TrEMBLA0A291I3121e-129A0A291I312_BRARR; TCP8
TrEMBLM4EGH21e-129M4EGH2_BRARP; Uncharacterized protein
STRINGBra027886.1-P1e-130(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102182433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.12e-79TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]