PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC25023_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 195aa    MW: 21927.1 Da    PI: 8.6446
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC25023_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.32.8e-0871115655
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +++ r RR+ri ++ +eL +l+P       +Kl+ ae+ + A +Y+k Lq
  RrC25023_p1  71 SIAARERRRRIADKTQELTKLIPGG-----QKLNTAEMFQAAAKYVKFLQ 115
                  577899*****************86.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.23E-1163125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.30965114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-1068125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.9E-671115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-871120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.47E-486118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MDSFLPTSKR QRLCNSSYHC NTHNHFPNPN LAFVPEASIF PEFRVPDFPL AFEVGRGDQE  60
GTKKPTLSSQ SIAARERRRR IADKTQELTK LIPGGQKLNT AEMFQAAAKY VKFLQSQVGI  120
LQMMQTTKKT QGISNAEIEA QVLLGSQAIQ EKLSTEEVCL VPCEMVRDLT SEESIWKNPK  180
ISREITKLLS TDLAN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018482308.11e-123PREDICTED: transcription factor bHLH53-like isoform X1
SwissprotQ84RD09e-91BH053_ARATH; Transcription factor bHLH53
TrEMBLA0A078I0N01e-118A0A078I0N0_BRANA; BnaA04g20390D protein
STRINGBra021933.1-P1e-118(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45472552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.14e-92bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]