PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC24276_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Dof
Protein Properties Length: 122aa    MW: 13402.6 Da    PI: 7.7706
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC24276_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof53.26.2e-1794122432
       zf-Dof   4 kalkcprCdstntkfCyynnyslsqPryf 32 
                    l+cprC+s+ntkfCy+nny+l+qPr+f
  RrC24276_p1  94 GPLNCPRCNSANTKFCYFNNYNLTQPRHF 122
                  5789************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-1877122IPR003851Zinc finger, Dof-type
PfamPF027011.9E-1395122IPR003851Zinc finger, Dof-type
PROSITE profilePS5088416.20996122IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MVFSSISSFL DPPINWPQSA NSNNHPNHPH QLHLQETGNL VSGHQVHSHQ FPPNPNPNHN  60
HADTTAAATG DHAGLSGSAS ERARLAKNSH PPEGPLNCPR CNSANTKFCY FNNYNLTQPR  120
HF
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018478155.18e-71PREDICTED: dof zinc finger protein DOF2.2 isoform X1
RefseqXP_018478157.15e-71PREDICTED: dof zinc finger protein DOF2.2 isoform X3
SwissprotQ9ZV333e-57DOF22_ARATH; Dof zinc finger protein DOF2.2
TrEMBLA0A0D3C2Q49e-66A0A0D3C2Q4_BRAOL; Uncharacterized protein
TrEMBLA0A3P6CIW79e-66A0A3P6CIW7_BRAOL; Uncharacterized protein
STRINGBo4g166830.12e-66(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53361749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28810.11e-35Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]