PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC24145_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family LBD
Protein Properties Length: 94aa    MW: 10230.9 Da    PI: 8.289
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC24145_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.82.2e-30294188
       DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88
                 +C++C+vlr++C+++C+l+p++     +++q +++ +v+k+FG++ ++++++a+pe++r+++++sl+yeA+ r+ +Pv+Ga+g+++++++ ++
  RrC24145_p1  2 SCNGCRVLRKGCSENCILRPCLqwietADAQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLYEACGRTVNPVNGAIGMLWTGSWSIC 94
                 6*********************9998666789*********************************************************9886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.948194IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-25294IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSENCILR PCLQWIETAD AQGHATVFVA KFFGRAGLMS FISAVPESQR  60
PALFQSLLYE ACGRTVNPVN GAIGMLWTGS WSIC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892581e-76AC189258.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB021J09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018436481.13e-65PREDICTED: LOB domain-containing protein 37-like
SwissprotQ9FN118e-64LBD37_ARATH; LOB domain-containing protein 37
TrEMBLA0A078HYI12e-62A0A078HYI1_BRANA; BnaC02g16720D protein
TrEMBLV4MIP74e-62V4MIP7_EUTSA; Uncharacterized protein
STRINGXP_006393945.17e-63(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.13e-66LOB domain-containing protein 37
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]