PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC23100_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family LBD
Protein Properties Length: 241aa    MW: 26398.8 Da    PI: 8.2145
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC23100_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260989.7e-312103197
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C+vlr++C++ C+l+p++     +++q +++ +v+k+FG++ ++++++++pe++r+++++sl+yeA+ r+ +Pv+Gavg+++++++ ++q+++e
  RrC23100_p1   2 SCNGCRVLRKGCSETCILRPCIqwiesAEAQGHATVFVAKFFGRAGLTSFISSVPESHRSALFQSLLYEACGRTVNPVNGAVGLLWTGNWSICQAAVE 99 
                  6*********************9998777889****************************************************************99 PP

       DUF260  94 lall 97 
                  ++l+
  RrC23100_p1 100 TVLR 103
                  9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.6371107IPR004883Lateral organ boundaries, LOB
PfamPF031958.9E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCILR PCIQWIESAE AQGHATVFVA KFFGRAGLTS FISSVPESHR  60
SALFQSLLYE ACGRTVNPVN GAVGLLWTGN WSICQAAVET VLRGGSLRPI PELLTRDGGF  120
PSATSDEASE ICTEMMNDSG DRSIYHHSRF SSSRSRSTAS PPKRRRLASE QQRRPSSEID  180
FSLTPALPTK TTPFKEETRR PETPSLYSEE SVITAPFTDN IASERFVRGG GETAKLLNLF  240
A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162166KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481066.11e-161PREDICTED: LOB domain-containing protein 38-like
SwissprotQ9SN231e-124LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A3P5YEH01e-149A0A3P5YEH0_BRACM; Uncharacterized protein
STRINGBra036040.1-P1e-148(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.11e-108LOB domain-containing protein 38