PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2219_p3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TCP
Protein Properties Length: 326aa    MW: 36279.6 Da    PI: 7.3831
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2219_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.67.9e-37521672133
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaakskks 100
                  g+kdrhsk+ T++g+RdRR+Rls+ +a++f+dLqd+LGfd++sk++eWL+++a  +i el+    s++ +                +a + +++  +s
  RrC2219_p3  52 SGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAAADSISELPPI-ISTS-FD---------------QALSLSKSACSS 133
                 689************************************************************9.3333.11...............122223334455 PP

         TCP 101 qksaasalnlak.esrakarararertrekmrik 133
                  +s++s+l+l++ esr kar+rarert++++ ++
  RrC2219_p3 134 GTSESSMLSLSRtESRGKARERARERTAKDKDKD 167
                 6777778********************9998776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.2E-3353135IPR005333Transcription factor, TCP
PROSITE profilePS5136931.80254112IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.833146164IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MEVDDDIEAQ QQEQQQTSRK LQRISSDNNN DKTVMRDWNN PSSRIIRVSR ASGGKDRHSK  60
VLTSKGLRDR RIRLSVATAI QFYDLQDRLG FDQPSKAVEW LINAAADSIS ELPPIISTSF  120
DQALSLSKSA CSSGTSESSM LSLSRTESRG KARERARERT AKDKDKDLQN APDNQSSFTQ  180
LLTGGFDEPN RNWIGGSSSD CFNPVQLLPS PSSSSSLHHH YNNTTNHRQE TSLNHHFSFV  240
PDYNFGISSS DSPGAAGGCY TSRGTLQSNS HSLFLNNVNQ RPISFMATPP PLDHHNHQLP  300
AAFDGRLYLY YGEGNRSSDD KEKDGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-2159113155Putative transcription factor PCF6
5zkt_B4e-2159113155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). In association with ABAP1, exerts a negative role in cell proliferation in leaves, possibly by inhibiting mitotic DNA replication. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18818695, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00169DAPTransfer from AT1G30210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018468446.10.0PREDICTED: transcription factor TCP24-like
RefseqXP_018468453.10.0PREDICTED: transcription factor TCP24-like
SwissprotQ9C7581e-143TCP24_ARATH; Transcription factor TCP24
TrEMBLM4EU830.0M4EU83_BRARP; Uncharacterized protein
STRINGBra032365.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138401726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.21e-123TCP family protein
Publications ? help Back to Top
  1. Wang H,Mao Y,Yang J,He Y
    TCP24 modulates secondary cell wall thickening and anther endothecium development.
    Front Plant Sci, 2015. 6: p. 436
    [PMID:26157444]
  2. Zhu P, et al.
    Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972
    [PMID:27708161]