PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC21298_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 175aa    MW: 20039 Da    PI: 10.0601
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC21298_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.62.4e-161050242
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                 +i n+s r++t+ kR+ g+lKKA+E+ +LC++++  ii+s+
  RrC21298_p1 10 FIVNNSSRKTTYKKRKRGLLKKAHEIFTLCGINAGAIIYSP 50
                 799************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.8E-22160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.722149IPR002100Transcription factor, MADS-box
CDDcd002662.70E-16285No hitNo description
SuperFamilySSF554555.62E-24295IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-10323IPR002100Transcription factor, MADS-box
PfamPF003191.8E-141051IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MTRRKVKLAF IVNNSSRKTT YKKRKRGLLK KAHEIFTLCG INAGAIIYSP YDPTPEVWPS  60
VEGMNQVITT FRNLPEIDRH NNMVNQQEFV QQRITKADKL LLKKKKDNRE VNLTEDMYRF  120
LQIGQLTIPA GGHNNPALAR DLNDLGYLVD QYLNSLNHRI QILEGGSDVE SGESL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKVKLAFIVNNSSRKTTYKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6084923e-85AB608492.1 Raphanus sativus DNA, microsatellite locus RsSH024, cultivar: rat-tail radish.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444906.11e-126PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK31e-51AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A3P5ZG071e-64A0A3P5ZG07_BRACM; Uncharacterized protein
TrEMBLM4FIU31e-64M4FIU3_BRARP; Uncharacterized protein
STRINGBra041022.1-P2e-65(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-47AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]