PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC20592_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Dof
Protein Properties Length: 208aa    MW: 21746 Da    PI: 10.666
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC20592_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof29.81.3e-091224162
       zf-Dof 41 tkGGalrnvPvGggrrknkkss 62
                 t+GGalrnvPvGgg+r+nkk++
  RrC20592_p1  1 THGGALRNVPVGGGCRRNKKAK 22
                 8******************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-4119IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
THGGALRNVP VGGGCRRNKK AKTGNSKSAS SQTKQSASMV NAPSPTNIQL QTNSQLPFLP  60
TLQNLTQLGG IGLNLAAING NSVGNSNTSS SFFNDLGFYH GANTSGSVMA NNNNENNIMT  120
SLGSASHFAM LDRSMGLYSF PNEGNMVLSS STASRVSQTA PVKREETHVG SISRPVSGLT  180
SAGNQSNQYW PGLSLPGSSS NDRQQHLM
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018478156.11e-145PREDICTED: dof zinc finger protein DOF2.2 isoform X2
SwissprotQ9ZV338e-89DOF22_ARATH; Dof zinc finger protein DOF2.2
TrEMBLA0A3N6SB751e-126A0A3N6SB75_BRACR; Uncharacterized protein
STRINGBo4g166830.11e-124(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53361749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28810.21e-78Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]