PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC20161_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family LBD
Protein Properties Length: 274aa    MW: 29326.7 Da    PI: 8.262
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC20161_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.94.7e-40521531101
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkCa++C++ap+f ++q +++fa+vhk+FGasnv+kll+++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++l+ael+l+
  RrC20161_p1  52 PCGACKFLRRKCASGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLHHIPVNRRHDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELSLV 149
                  7***********************9989********************************************************************** PP

       DUF260  98 keel 101
                  +++l
  RrC20161_p1 150 QSQL 153
                  9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.37651153IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-3952150IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MADQQRNHNT SDSRRKSAAG KRTSQRTTTS LFSSGGGAMA ATATTGTGTA SPCGACKFLR  60
RKCASGCIFA PHFGSDQGAA RFAAVHKVFG ASNVSKLLHH IPVNRRHDAV VTISYEAQAR  120
LSDPVYGCVS TILALQQQVA SLQAELSLVQ SQLINSRVAM ANVMQQQQQQ QSHHQQQQLV  180
VMQQTEYSNN SSASTTLAGA TMNSFTATAA AAVSYDVMVP ANLEHSLQPM PRHQQVTINH  240
HEDEEESGTD FSVAVGSTTV AAEIIFPAEG FHRI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-40431542112LOB family transfactor Ramosa2.1
5ly0_B9e-40431542112LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013745038.11e-154LOB domain-containing protein 20
SwissprotQ9SRV31e-146LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A3P6AZN01e-153A0A3P6AZN0_BRAOL; Uncharacterized protein
STRINGBra036436.1-P1e-149(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.11e-130LOB domain-containing protein 20