PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC19558_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 220aa    MW: 25037.1 Da    PI: 8.7009
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC19558_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B31079.4e-3416122199
                  EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 
                  f+k ltpsdv+k++rlv+pk++ae++        ++  e+++ l++edesg+sW+++++y+++s++yvltkGW+++vk+++L++gD+v F+++ r + 
  RrC19558_p1  16 FEKSLTPSDVGKLNRLVIPKQYAEKYlplnngggDMTAEKGMLLSFEDESGKSWKFRYSYWNSSQSYVLTKGWSKYVKDKHLDAGDVVFFQRH-RfDF 112
                  99******************************9978888****************************************************65.4488 PP

                  E..EEEEE-S CS
           B3  90 felvvkvfrk 99 
                   +l+++++r+
  RrC19558_p1 113 HRLFIGWRRR 122
                  8899999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-3912131IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.41E-3213128IPR015300DNA-binding pseudobarrel domain
CDDcd100175.07E-3115113No hitNo description
SMARTSM010194.5E-2516123IPR003340B3 DNA binding domain
PfamPF023622.1E-3016122IPR003340B3 DNA binding domain
PROSITE profilePS5086314.45216123IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MSCPLHLHQI VPTSLFEKSL TPSDVGKLNR LVIPKQYAEK YLPLNNGGGD MTAEKGMLLS  60
FEDESGKSWK FRYSYWNSSQ SYVLTKGWSK YVKDKHLDAG DVVFFQRHRF DFHRLFIGWR  120
RRGEASYPSA ASAVSQEVHV NTTAYWSGLT TPYRQVHTST SSYPNIHQEY SQYGAVAETP  180
TVVARSSRTV RLFGVNLECH GDVVEPPPCP DGYNGQHIYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-431413112130DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013622680.11e-138PREDICTED: B3 domain-containing protein At3g11580-like
RefseqXP_013644761.11e-138PREDICTED: B3 domain-containing protein At3g11580-like
SwissprotQ8RYD31e-118Y3158_ARATH; B3 domain-containing protein At3g11580
TrEMBLA0A0D3BAS01e-138A0A0D3BAS0_BRAOL; Uncharacterized protein
STRINGBra001411.1-P1e-137(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.11e-119B3 family protein