PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC18229_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family LBD
Protein Properties Length: 263aa    MW: 27868.1 Da    PI: 8.4194
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC18229_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.71e-294107199
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C+vlr++C++dC ++p++     p++q++++ +++k++G++ +++l++a p++ r+ +++sl+ eA+ r+ +P+yG+vg+++++++ql+q+++e
  RrC18229_p1   4 SCNGCRVLRKGCSDDCSIRPCLawiksPEAQANATVFLAKFYGRAGLMNLINAGPDHLRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQAAVE 101
                  6************************************************************************************************9 PP

       DUF260  94 lallke 99 
                  +++ +e
  RrC18229_p1 102 AVMKGE 107
                  988776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381558.2E-951263IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089116.2753109IPR004883Lateral organ boundaries, LOB
PfamPF031957.6E-244104IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDDCS IRPCLAWIKS PEAQANATVF LAKFYGRAGL MNLINAGPDH  60
LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQAAV EAVMKGEPIT EMATDAATNG  120
QGPPLKMYDI RHISKDESSA AAAAAAAGLT DLKKPKARRA KRLAAVAKPA ESEGKSGGGE  180
ASHVSSLSHQ SEIVAAQEGD SNISEVMAFS PPAVQSSGEI KLDLTLGLEP VVHACNVVPL  240
KKRKIGAFAM CQEESPCKTE LKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2088770.0AY208877.1 Brassica napus seed specific protein Bn15D17A mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018492744.10.0PREDICTED: LOW QUALITY PROTEIN: LOB domain-containing protein 41
SwissprotQ9M8861e-154LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A3P6AWN51e-174A0A3P6AWN5_BRAOL; Uncharacterized protein
STRINGBo3g055690.11e-173(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77212741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-137LOB domain-containing protein 41