PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1679_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TCP
Protein Properties Length: 351aa    MW: 39439.1 Da    PI: 7.2764
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1679_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP96.35.8e-3063175289
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........................ssssasec 73 
                  g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl++ak  +++l+ +                           s       
  RrC1679_p1  63 FGGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLEAAKDDVDKLPPLqfphgfnqmypnlifaessstsafpvsS------- 154
                 689*************************************************************5555555444444444333222222220....... PP

         TCP  74 eaesssssasnsssg...................k 89 
                               +                   +
  RrC1679_p1 155 --------------PtsafpgtnlgflqswdlggS 175
                 ..............122233333334444444441 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136929.78965123IPR017887Transcription factor TCP subgroup
PfamPF036343.0E-2865200IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MRSRECDEEE SHQAKQERDH NHNHQVNLNN MLEQHNQPSS VSSSRQWTSA FRNPRIVRVS  60
KAFGGKDRHS KVCTVRGLRD RRIRLSVPTA IQLYDLQDRL GLSQPSKVID WLLEAAKDDV  120
DKLPPLQFPH GFNQMYPNLI FAESSSTSAF PVSSPTSAFP GTNLGFLQSW DLGGSSSRTR  180
SRITETTTTP RESFDLDKGK WIKQDENSNH QEHGFDMNHN HFSLTNPYNN NNTSSYYNLG  240
HLQHSLDQSG NNVTVAISNV PNNNNNNNLN LPPPAMSSLF PTYPSFLGGS HQHHHVVDGA  300
GNLQLFGSNA NTASQQQMMT GNSSLIRPLH HLMSSNNHDM DRHSSDNDSH S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-1970124155Putative transcription factor PCF6
5zkt_B3e-1970124155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018455057.10.0PREDICTED: transcription factor TCP5-like isoform X1
SwissprotQ9FME31e-175TCP5_ARATH; Transcription factor TCP5
TrEMBLA0A078J6M40.0A0A078J6M4_BRANA; BnaC07g49840D protein
TrEMBLA0A3N6RHT10.0A0A3N6RHT1_BRACR; Uncharacterized protein
TrEMBLA0A3P6E5P10.0A0A3P6E5P1_BRAOL; Uncharacterized protein
STRINGBo7g098260.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35762763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.11e-146TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]