PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1635_p5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 298aa    MW: 34203.4 Da    PI: 10.2292
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1635_p5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.62.7e-1919113199
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 ffk++ ++d +++++  +p +f+ ++ +k+  s +++++ ++g sWev +  +k+++  y+ ++GW++Fv +n L +++fv+F+++g ++f  +v ++r
  RrC1635_p5  19 FFKIFQSADLSSESMRAFPYDFM-KNVSKEDFSNKMVIRAQWGSSWEVDI--SKNPRFyYMEKSGWNQFVTDNALGANEFVTFTHKGLMCF--NVNIYR 112
                 99***99****************.6656778999****************..******566669********************9988***..999988 PP

                 S CS
          B3  99 k 99 
                 k
  RrC1635_p5 113 K 113
                 7 PP

2B341.13.2e-13205284993
                 HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                   + +++l +pk+f ee+ +  ++s+  ++++++g  sWev +   +++ ++++++GW++ +++  L  gD ++F+l++ +ef  v
  RrC1635_p5 205 KKSYLKILGIPKNFYEEYIK--NGSMVYKIRHPEGeGSWEVLC--LGRKTQTIFSSGWSQLAREYPLSIGDRCTFRLVKPTEF--V 284
                 344456799*********64..4999******99889******..999999*************************9986666..3 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-1814115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-1914119IPR015300DNA-binding pseudobarrel domain
CDDcd100175.06E-1718112No hitNo description
SMARTSM010191.8E-2319114IPR003340B3 DNA binding domain
PfamPF023629.2E-1819113IPR003340B3 DNA binding domain
PROSITE profilePS5086313.28119114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.3E-15196291IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.814197291IPR003340B3 DNA binding domain
SuperFamilySSF1019361.28E-16197289IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.7E-15200291IPR003340B3 DNA binding domain
PfamPF023621.6E-10201285IPR003340B3 DNA binding domain
CDDcd100173.15E-8207289No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MVWNRGFGQV KEERKTLSFF KIFQSADLSS ESMRAFPYDF MKNVSKEDFS NKMVIRAQWG  60
SSWEVDISKN PRFYYMEKSG WNQFVTDNAL GANEFVTFTH KGLMCFNVNI YRKNGKEILV  120
PQKPHTTTPF SGIKKEEGER SYKDVKNEDE SMGGGVELAA EAKTAKTKKN AVEIGESSRG  180
AALRNKKAEK IKKKKAVPKF KITIKKSYLK ILGIPKNFYE EYIKNGSMVY KIRHPEGEGS  240
WEVLCLGRKT QTIFSSGWSQ LAREYPLSIG DRCTFRLVKP TEFVLTSRKA KEEIIVID
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013653362.11e-150PREDICTED: B3 domain-containing protein At3g17010-like
SwissprotQ9LSP61e-109Y3701_ARATH; B3 domain-containing protein At3g17010
TrEMBLA0A078CLE61e-150A0A078CLE6_BRANA; BnaC03g39810D protein
STRINGBra001648.1-P1e-149(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17010.12e-99B3 family protein