PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC16212_p2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 253aa    MW: 28422.9 Da    PI: 9.8724
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC16212_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.56.4e-1519112198
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  ffk+l  +d +++++  +p++f ++ + k + + ++tl+  +g +W+v+l  +   g y+++ kGWk+F ++n+L + +f++F+ +g+++   +v ++
  RrC16212_p2  19 FFKILADEDLSSESMRLIPNEFWTRSECK-NLPPKVTLKVAWGSTWTVNL--STFMGFYLMErKGWKKFLSDNHLGDDEFLTFTNQGNNCI--TVDIY 111
                  99********************9888544.56779***************..888888655549********************6665555..66666 PP

                  - CS
           B3  98 r 98 
                  +
  RrC16212_p2 112 Q 112
                  5 PP

2B348.51.5e-151692481196
                  HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  + + +l++p +fa+eh+ k  +  + ++ d++g+ W+v++    +  + ++++GW+  +k  gL +gD ++F+l++   +e+v+ v
  RrC16212_p2 169 SHLTLLIIPLDFANEHMPK--GRAKFVIHDPKGKPWDVTY--VPSNASKLFSSGWRILAKGYGLAVGDLCTFRLVK--PKEMVLEV 248
                  445679**********733..6679***************..88888899***********************986..44456555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.0E-1615115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.88E-1517118IPR015300DNA-binding pseudobarrel domain
CDDcd100175.84E-1318111No hitNo description
PROSITE profilePS5086312.18219114IPR003340B3 DNA binding domain
PfamPF023625.2E-1319112IPR003340B3 DNA binding domain
SMARTSM010195.7E-1219114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.3E-19153250IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-19155250IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.253159252IPR003340B3 DNA binding domain
CDDcd100171.51E-13162249No hitNo description
SMARTSM010192.1E-14162252IPR003340B3 DNA binding domain
PfamPF023621.6E-12167246IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MARNRAFGRL QEDMNKTSFF KILADEDLSS ESMRLIPNEF WTRSECKNLP PKVTLKVAWG  60
STWTVNLSTF MGFYLMERKG WKKFLSDNHL GDDEFLTFTN QGNNCITVDI YQKNCIEILK  120
PLNTSSSKKS CVDPVIAESK MKKKVDSNVN GASSSSSSAA TFSLTIKKSH LTLLIIPLDF  180
ANEHMPKGRA KFVIHDPKGK PWDVTYVPSN ASKLFSSGWR ILAKGYGLAV GDLCTFRLVK  240
PKEMVLEVLH ASP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013725469.11e-155PREDICTED: B3 domain-containing protein At5g18000-like
TrEMBLA0A078H0V81e-155A0A078H0V8_BRANA; BnaA04g25590D protein
STRINGBra037663.1-P1e-151(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35310.13e-51B3 family protein