PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC14786_p2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 188aa    MW: 20836.8 Da    PI: 8.911
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC14786_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.42.3e-19145181135
         GATA   1 Cs..nCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C+  nC++++Tp+WRrgp g+ktLCnaCG+++rk+++
  RrC14786_p2 145 CTnlNCNAIDTPMWRRGPLGPKTLCNACGIKFRKEEE 181
                  66569*****************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.8E-7141188IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-11143182No hitNo description
PfamPF003201.0E-16145181IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.5E-13149180IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.98E-11149178No hitNo description
PROSITE profilePS5011411.372149177IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MEKELDLTLR LGLPSPAVET KLSLDTPPTT NQGTNVDETH GHRHIFGNED EPIDVNMRYY  60
NLIFNHFAGI GETLNFAPFP IQPSAPVTLP ASPTRSDYVL IDVPARRAVR NSLATGNALD  120
ANANKKQRRG CGGCCGGRIG WLRKCTNLNC NAIDTPMWRR GPLGPKTLCN ACGIKFRKEE  180
ERMSKRTF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013681998.12e-95PREDICTED: GATA transcription factor 29-like
SwissprotQ9LT453e-47GAT29_ARATH; GATA transcription factor 29
TrEMBLA0A078H4R72e-95A0A078H4R7_BRANA; BnaC03g41730D protein
STRINGBra001801.1-P1e-88(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106522234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.13e-49GATA transcription factor 29