PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC14130_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NF-YA
Protein Properties Length: 210aa    MW: 23507.8 Da    PI: 10.8224
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC14130_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA88.87.5e-2855114258
    CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRaklee...ekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                   +++VN+KQy++I++RRq+Rak+++   ++k ++++rkpy+h+SRh hAlrRpRgsgGrF
  RrC14130_p1  55 GTIFVNSKQYHAIIRRRQSRAKAAAvidKNKQSSRGRKPYMHHSRHLHALRRPRGSGGRF 114
                  689*********************999999999**************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.6E-2852117IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115233.53553117IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.5E-215678IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.1E-2256114IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.5E-2191114IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MMVLVNSPKR VMQRVQELYL SLMELLSQCN HLAWNSDLLN NSRVMLPLNM ETEDGTIFVN  60
SKQYHAIIRR RQSRAKAAAV IDKNKQSSRG RKPYMHHSRH LHALRRPRGS GGRFLNTKSG  120
TSAKKADGTK KPQTQSQAIS QQSNSQNSEV LHPERGTMNL TTGHNVSGSE VTSMNYFLSS  180
LVHSLGGMLT PSKWTASEAA VYNGCCYFKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A1e-1554115260HAPB protein
4g92_A1e-1554115260HAPB protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529912e-65AK352991.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-H06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013639359.11e-106PREDICTED: nuclear transcription factor Y subunit A-2-like
RefseqXP_013639362.11e-106PREDICTED: nuclear transcription factor Y subunit A-2-like
RefseqXP_013639364.11e-106PREDICTED: nuclear transcription factor Y subunit A-2-like
RefseqXP_013639369.11e-106PREDICTED: nuclear transcription factor Y subunit A-2-like
RefseqXP_013639374.11e-106PREDICTED: nuclear transcription factor Y subunit A-2-like
SwissprotQ9M9X42e-92NFYA2_ARATH; Nuclear transcription factor Y subunit A-2
TrEMBLA0A0D3AFG31e-106A0A0D3AFG3_BRAOL; Uncharacterized protein
STRINGBra040529.1-P1e-99(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30082767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05690.12e-84nuclear factor Y, subunit A2