PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC140_p4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TCP
Protein Properties Length: 380aa    MW: 41770.5 Da    PI: 8.9896
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC140_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP121.88e-38531912134
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssaseceaesssssasnsssg.. 88 
                 g+kdrhsk+ T++g+RdRRvRls+++a +f+dLqd+LG+d++sk++eWL+++a+ +i el+++           +    ++  +++  s       +  
  RrC140_p4  53 SGGKDRHSKVWTSKGPRDRRVRLSVSTALQFYDLQDRLGLDQPSKAVEWLIKAAEDSISELPSLnntnfpmndydN----NQIPTGTGAS-------Saa 141
                689*************************************************************444333221110....1222222222.......123 PP

        TCP  89 ..kaaksaa.kskksqksaasalnlak.esrakarararertrekmrikn 134
                  ++ +++a +s++++++++s l+l++ e r kar+rarert+++ + ++
  RrC140_p4 142 aaNSLSKSAcSSNSDTSKNSSGLSLSRsELRDKARERARERTAKETKERD 191
                44445555546777777778889999999*************99988775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-3754189IPR005333Transcription factor, TCP
PROSITE profilePS5136930.94255113IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.205169190IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MFIEKKFRNE IIGDDEMIGD LMKNNNGDVV DNNNRLSRWH HNSSRIIRVS RASGGKDRHS  60
KVWTSKGPRD RRVRLSVSTA LQFYDLQDRL GLDQPSKAVE WLIKAAEDSI SELPSLNNTN  120
FPMNDYDNNQ IPTGTGASSA AAANSLSKSA CSSNSDTSKN SSGLSLSRSE LRDKARERAR  180
ERTAKETKER DHHSTTTTSF TDLLNSGSDP VNANRQWMAP SSSSPPPPME YFSSGLILGS  240
GQTHFPIQTN SPHPFSSSPH QEFSFVPDHL MSPAGASGFN LDFNMSTTTS TAGFSGFNRG  300
TLQSNSTNHQ HHQSFLANLQ RFPSSSEGGG GGGGPQFLFG TGALPAENHH LHHHNNNSHQ  360
FQLYYENGRR NSDHKGNGKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2260114155Putative transcription factor PCF6
5zkt_B1e-2260114155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179, ECO:0000269|PubMed:26596765}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:26596765}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895530.0AC189553.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006A08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013706936.10.0transcription factor TCP2-like
SwissprotQ93V431e-175TCP2_ARATH; Transcription factor TCP2
TrEMBLA0A3P6EJF40.0A0A3P6EJF4_BRAOL; Uncharacterized protein
STRINGBo7g105960.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76152539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.22e-56TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  2. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]