PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC12586_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TCP
Protein Properties Length: 327aa    MW: 37224.2 Da    PI: 6.3224
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC12586_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1172.4e-36842182124
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....eaesssssasnsssg....... 88 
                  ++kkdrhskihT++g+RdRRvRls+ +a++fFdLqd LGf k+s+t++WLl+++ +ai el++++  ++++     + +++++ ++n   +       
  RrC12586_p1  84 TVKKDRHSKIHTAQGLRDRRVRLSIGVARQFFDLQDVLGFGKASETLDWLLKKSRRAINELAQDKKLNSKDEdfgnNRGDEEEDEDNG--Dksfvygl 179
                  79**************************************************************444442222333222222222222..23467788 PP

          TCP  89 ..kaaksaa.kskksqksaasalnlakesrakararare 124
                    +++++   + kk++k++ s   l ++sr k+++  r+
  RrC12586_p1 180 spDSCEEVVcEVKKTEKNNISSKGLREKSRGKSKQITRK 218
                  776666666444444444444444444555444444443 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.0E-3485216IPR005333Transcription factor, TCP
PROSITE profilePS5136932.66186144IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MSSSNNDYNN GNSGVYPLSL YLSSLPGHQS TIRNPYNHQS TASPGQMVSA VPESLIDYMS  60
FNSNTAVNQQ GFEIPEVSRE IKKTVKKDRH SKIHTAQGLR DRRVRLSIGV ARQFFDLQDV  120
LGFGKASETL DWLLKKSRRA INELAQDKKL NSKDEDFGNN RGDEEEDEDN GDKSFVYGLS  180
PDSCEEVVCE VKKTEKNNIS SKGLREKSRG KSKQITRKMT YDHPETVSKI TQTEIMDPFK  240
SSIIFNEGDD MTNSFYKEAT FPQVNLPTDM DRSYNQHHET FMLKDQGSSS NYNTILPQNL  300
DYGFDQNHFM DQTFCAVTNR NFPRGFP
Functional Description ? help Back to Top
Source Description
UniProtInvolved in petal morphogenesis. {ECO:0000269|PubMed:17940055}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892000.0AC189200.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB005J17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009127539.10.0PREDICTED: transcription factor TCP1-like
SwissprotQ9FYG71e-145TCP1_ARATH; Transcription factor TCP1
TrEMBLM4EYW80.0M4EYW8_BRARP; Uncharacterized protein
STRINGBra034010.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67332744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.21e-128TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]