PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC12550_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 236aa    MW: 26137.7 Da    PI: 8.4128
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC12550_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.32.9e-20110144135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  RrC12550_p1 110 CTNCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 144
                  ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.982104140IPR000679Zinc finger, GATA-type
SMARTSM004014.6E-21104156IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.24E-13107144No hitNo description
Gene3DG3DSA:3.30.50.103.6E-17108144IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.96E-13109141No hitNo description
PfamPF003207.6E-18110144IPR000679Zinc finger, GATA-type
PROSITE patternPS003440110135IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MTQGRYCESC GWFHDHTYQT CLFVHNGNVC SNTQPAVVDC TLSLGPPSTT TTRLSERDKK  60
KTRRSGTSSR VSNFMDTNKN TSKTSAYSVL PSSNRRSTLG GGDTLLDRRC TNCDTTSTPL  120
WRNGPRGPKS LCNACGIRFK KEERRTMDTT RMTASSTAAQ DQYGHHPSSY SNHHSATDQS  180
GSSTCNFVAS EIMLNHDYGG AGEYYRRDPV DGVNGLPSHS WRLNVEDTAM SLVYDF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009103517.11e-150PREDICTED: GATA transcription factor 18-like
RefseqXP_013651744.11e-150PREDICTED: GATA transcription factor 18-like
SwissprotQ8LC795e-57GAT18_ARATH; GATA transcription factor 18
TrEMBLA0A078I7W81e-150A0A078I7W8_BRANA; BnaA07g12520D protein
TrEMBLM4D6H11e-150M4D6H1_BRARP; Uncharacterized protein
STRINGBra012080.1-P1e-150(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1878778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.18e-45GATA family protein