PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC12469_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 162aa    MW: 18915.2 Da    PI: 10.3022
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC12469_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.74.8e-161150342
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                 i+++s r vtf kR++g+lKK +EL +LC+ +++ ii+s 
  RrC12469_p1 11 ISDNSTRRVTFRKRKHGLLKKLNELTILCGLRACAIIYSD 50
                 8999**********************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.1E-21185IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.969150IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-19160IPR002100Transcription factor, MADS-box
CDDcd002668.54E-23285No hitNo description
PRINTSPR004045.7E-8323IPR002100Transcription factor, MADS-box
PfamPF003194.6E-151150IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MGRRKVTHQL ISDNSTRRVT FRKRKHGLLK KLNELTILCG LRACAIIYSD YEEGPEVWPN  60
RKEVRVLLNR FRELPVEKQT KFMMDQKDLM TRMIQDAKKR LEKEQMHSRV MELGLRASST  120
DINDGDYSED LIKAADVVEK KIKVIRERIK AVESGAAIVM IE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKVTHQLISDNSTRRVTFRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018484053.11e-116PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A078G8N01e-108A0A078G8N0_BRANA; BnaA09g30550D protein
TrEMBLA0A397Y7X21e-108A0A397Y7X2_BRACM; Uncharacterized protein
STRINGBra024521.1-P1e-108(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.22e-76AGAMOUS-like 87