PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC12312_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 320aa    MW: 35401.4 Da    PI: 6.7332
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC12312_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.95.1e-17229262134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  RrC12312_p1 229 CLHCEITKTPQWRLGPMGPKTLCNACGVRYKSGR 262
                  99*****************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.1E-921319IPR016679Transcription factor, GATA, plant
SMARTSM004011.0E-15223273IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.583223259IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.5E-14227260IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577169.5E-15227286No hitNo description
CDDcd002021.35E-13228275No hitNo description
PfamPF003205.9E-15229262IPR000679Zinc finger, GATA-type
PROSITE patternPS003440229254IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009845Biological Processseed germination
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MIGQSFPEDL DCGNFFDNMD DILDFPGGDI DVGFDIGDSD SFPNIWTTHH DTWPAASDPL  60
FSSNTNSDSS PELYVPFEDI VKVERPPRFL EESLVEKKED SFSTNMDSSS SHSTFRSSSP  120
VSVLESSSSS SQTTNTTSLV LPGKHGRPRT KRPRPHVHEK DGVKDIVDSC LIVRIPKQFL  180
SDHSKMITKK KKKKAKVTSS SSSSGIDLEV NGNSNVDSYS SEQNPVRKCL HCEITKTPQW  240
RLGPMGPKTL CNACGVRYKS GRLFPEYRPA ASPTFTPALH SNSHKKVAEM RSKRCKGGSH  300
TTEENDLQDL IPNNAYIGVD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150154KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0780290.0AY078029.1 Arabidopsis thaliana AT3g54810/F28P10_210 mRNA, complete cds.
GenBankAK3175030.0AK317503.1 Arabidopsis thaliana AT3G54810 mRNA, complete cds, clone: RAFL23-14-K23.
GenBankAF4121070.0AF412107.1 Arabidopsis thaliana AT3g54810/F28P10_210 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013707522.11e-179PREDICTED: GATA transcription factor 8-like
SwissprotQ9SV301e-170GATA8_ARATH; GATA transcription factor 8
TrEMBLA0A0D3CTV41e-179A0A0D3CTV4_BRAOL; Uncharacterized protein
STRINGBra003194.1-P1e-172(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49752751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-134GATA family protein