PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC11789_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TCP
Protein Properties Length: 328aa    MW: 35905.3 Da    PI: 7.4833
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC11789_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP116.43.7e-3626139289
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................ssssaseceaessss 80 
                  +gkkdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LGfd++sk+++WL+++ak ai++l+++                   s              
  RrC11789_p1  26 TGKKDRHSKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSKAVDWLIKKAKSAIDDLAELppwnpadtirqaaankpkrS-------------- 109
                  79**************************************************************65554444433332221110.............. PP

          TCP  81 sasnsssg............................k 89 
                         +                            +
  RrC11789_p1 110 -------KtlipppatteihggsgeetehhpsvflpA 139
                  .......122223333333333333333444444542 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.0E-322695IPR005333Transcription factor, TCP
PROSITE profilePS5136934.072886IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
RHQSALEHGG CGEIVEVEGG HIVRSTGKKD RHSKVCTAKG PRDRRVRLSA PTAIQFYDVQ  60
DRLGFDRPSK AVDWLIKKAK SAIDDLAELP PWNPADTIRQ AAANKPKRSK TLIPPPATTE  120
IHGGSGEETE HHPSVFLPAA SIYHQPPSRA DTQSQDLRLS LHSFQKAPPF AGETEHALFS  180
GQSNPLGFDS STASWDQSQQ NHRLVTWNNG GAADSAASGG GGFVFASPAT TTSYQPQSQF  240
FSQRGPLQSI NTPMLRAWFD PYHHHQSVTT NDHHHHHHHY HPYQSAIPGI AFASSGELSG  300
LRVPAARYQS EQDDHGDKPS SDSSDSRH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A8e-203386154Putative transcription factor PCF6
5zkt_B8e-203386154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00203DAPTransfer from AT1G53230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006392814.11e-159transcription factor TCP3
RefseqXP_006392815.11e-159transcription factor TCP3
SwissprotQ9MAH81e-138TCP3_ARATH; Transcription factor TCP3
TrEMBLV4JXC21e-158V4JXC2_EUTSA; Uncharacterized protein
STRINGXP_006392814.11e-159(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24082771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.11e-111TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3
Publications ? help Back to Top
  1. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  2. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  3. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]