PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC11754_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 378aa    MW: 42372.9 Da    PI: 8.8304
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC11754_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.12.9e-19228261134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  RrC11754_p1 228 CSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 261
                  *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.7E-21222274IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-13223262No hitNo description
Gene3DG3DSA:3.30.50.101.9E-15226261IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.466226258IPR000679Zinc finger, GATA-type
CDDcd002021.64E-12227255No hitNo description
PfamPF003205.5E-17228261IPR000679Zinc finger, GATA-type
PROSITE patternPS003440228253IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MGSNFHYSID LNEDQNHHEE PFFYPLGSSS SLLHNYQVPS NSSSSSSSVS SLSSYLPFLI  60
NSQEDQHVAY NNTYQYEQLH LSQPLKANMF NGGSSSSSYD HMVPKKETRL KLTIRKKDHH  120
DDQTDFLHQN PTKSNSDSDK WMMSPKMRLI KKTITNNKQP TDQANNNYNR NHKEDHYPLN  180
EKTSFEKDHD EDLKKVTTTT TTAVTTENRY STIKDNGYGN TNGVIRVCSD CNTTKTPLWR  240
SGPRGPKSLC NACGIRQRKA RRAAMAAAVA AGDQEKLQSK KKRSNGGDKF NISPPVMAKT  300
KKSKIKEQEH EDTTTVAGDS EISKSTTSSD SSISSNKLCF DDLTIMLSKN AAYQQVFPQD  360
EKEAAILLMA LSHGMVHG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013729137.10.0PREDICTED: GATA transcription factor 21-like
RefseqXP_013606072.10.0PREDICTED: GATA transcription factor 21-like
SwissprotQ5HZ361e-172GAT21_ARATH; GATA transcription factor 21
TrEMBLA0A078H4U10.0A0A078H4U1_BRANA; BnaC09g33380D protein
TrEMBLA0A0D3EBW10.0A0A0D3EBW1_BRAOL; Uncharacterized protein
STRINGBra002788.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21092675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.11e-155GATA family protein