PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC11458_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 301aa    MW: 34557.9 Da    PI: 4.8446
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC11458_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.72.1e-08176220655
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +++ r RR+ri ++ +eL +l+P a     +Kl+ ae+ e A +Y+k Lq
  RrC11458_p1 176 SIAARERRRRIADKTHELTKLIPGA-----QKLNTAEMFEAAAKYVKFLQ 220
                  567899******************9.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.16E-10163233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.417170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-10173239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-7176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-6176220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.47E-4192223No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MDCLSHFFDW DQPIQLQDCF IPDVDTTNPE TDSFFFQSQP QLQYHQPLFQ EEAPSQTLLE  60
LTDLDYLCDQ FLSPQETCLP YPKTEIFNQT HDLDSFLPTP KLQKLVSSSY QCHTHNHFSS  120
PNPNFFNYYD QLDLAPETSI FPNFQVPDFP LEFKVGRGDE DRSSHGTKKP SLSSQSIAAR  180
ERRRRIADKT HELTKLIPGA QKLNTAEMFE AAAKYVKFLQ SQVGILQMMQ NTTKTHISDA  240
EIKTRVLLGS KAIQEKLSRD ELCLVPCGMV RDLASEESIW RNPMISGEIN KFLSADMSNN  300
F
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018466572.10.0PREDICTED: transcription factor bHLH53-like
SwissprotQ84RD01e-132BH053_ARATH; Transcription factor bHLH53
TrEMBLA0A078IRR01e-163A0A078IRR0_BRANA; BnaCnng22590D protein
STRINGBo4g039270.11e-162(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45472552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.11e-123bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]