PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC11030_p2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family SBP
Protein Properties Length: 135aa    MW: 15602.3 Da    PI: 8.6145
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC11030_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.71.2e-4157134178
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                  +Cqve+C+ad+s+ak+yh+rhkvCe+h+kap v +sgl qrfCqqCsrfhel efD++krsCrrrLa+hn+rrr++++
  RrC11030_p2  57 ACQVERCTADMSRAKQYHKRHKVCEFHAKAPLVRISGLYQRFCQQCSRFHELGEFDDTKRSCRRRLAGHNQRRRRNTT 134
                  5*************************************************************************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0375753.1E-551135IPR017238Squamosa promoter-binding protein
Gene3DG3DSA:4.10.1100.101.6E-3251119IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.53955132IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.73E-3757133IPR004333Transcription factor, SBP-box
PfamPF031101.2E-3158131IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MSTRGSKAEG KRILRDMSEE EEEDEDTSEE EEEEVALEKK QKGKATTTTS SSSGSGACQV  60
ERCTADMSRA KQYHKRHKVC EFHAKAPLVR ISGLYQRFCQ QCSRFHELGE FDDTKRSCRR  120
RLAGHNQRRR RNTTQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-3849131284squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0054431e-77BT005443.1 Arabidopsis thaliana clone U50647 putative squamosa-promoter binding protein (At2g33810) mRNA, complete cds.
GenBankAK1181791e-77AK118179.1 Arabidopsis thaliana At2g33810 mRNA for putative squamosa-promoter binding protein, complete cds, clone: RAFL19-50-A02.
GenBankY094271e-77Y09427.1 A.thaliana mRNA for squamosa-promoter binding protein like 3.
GenBankAJ2429591e-77AJ242959.1 Arabidopsis thaliana mRNA for Squamosa promoter binding protein-like 3 (SPL3 gene).
GenBankAJ0116331e-77AJ011633.1 Arabidopsis thaliana (ecotype Landsberg erecta) mRNA for squamosa promoter binding protein-like 3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009141347.18e-66PREDICTED: squamosa promoter-binding-like protein 3
RefseqXP_013632192.19e-66PREDICTED: squamosa promoter-binding-like protein 3
SwissprotP930154e-58SPL3_ARATH; Squamosa promoter-binding-like protein 3
TrEMBLM4DZD39e-66M4DZD3_BRARP; Squamosa promoter-binding-like protein
STRINGBra021880.1-P2e-65(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86828118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.12e-53squamosa promoter binding protein-like 3