PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1003_p2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Dof
Protein Properties Length: 370aa    MW: 39657.8 Da    PI: 8.0764
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1003_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1245.1e-3970129362
      zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                 ++ +kcprC+s++tkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rknkk s
  RrC1003_p2  70 DHPQKCPRCESAHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKPS 129
                 6789*****************************************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-3458123IPR003851Zinc finger, Dof-type
PfamPF027011.5E-3271127IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.64973127IPR003851Zinc finger, Dof-type
PROSITE patternPS01361075111IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010067Biological Processprocambium histogenesis
GO:0010087Biological Processphloem or xylem histogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MGLTSLQVCM DSDWLQEAES SGGSMLDSTT TSPTAAEILA ACSTRPQASA MAVAAAALMD  60
GGRRLRPPHD HPQKCPRCES AHTKFCYYNN YSLSQPRYFC KTCRRYWTKG GTLRNIPVGG  120
GCRKNKKPSS SNSSSSTSSG KKPSNIVTTN TNDLMALAQS HQNYQNASLG FSHFGGNGMM  180
GSYTALGHSN VGFLESKYGG LLSPSPRPIE FLDSKLDLMG VNNDNPVMVD HGINGDHHHH  240
HHHHMGMNHG LGLNNNNHDG FQGISPANNG NGGGGLMDIS ISQRLMLANY EHHHYNHHED  300
NQRVTSIMDV KPSPKLLSLD WQQGQGYSDG SGNGGGGRSD GGSGYINGLG STWNGLMNGY  360
GSSTKTNSMV
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Promotes expression (PubMed:19915089). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). Involved in the regulation of interfascicular cambium formation and vascular tissue development, particularly at a very early stage during inflorescence stem development; promotes both cambium activity and phloem specification, but prevents xylem specification (PubMed:19915089). {ECO:0000250|UniProtKB:Q9M2U1, ECO:0000269|PubMed:19915089, ECO:0000269|PubMed:30626969}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00580DAPTransfer from AT5G62940Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489469.10.0PREDICTED: dof zinc finger protein DOF5.6
SwissprotQ9FM031e-161DOF56_ARATH; Dof zinc finger protein DOF5.6
TrEMBLA0A3P5YJN30.0A0A3P5YJN3_BRACM; Uncharacterized protein
STRINGBo3g106920.11e-180(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63742746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62940.11e-147Dof family protein
Publications ? help Back to Top
  1. Miyashima S, et al.
    Mobile PEAR transcription factors integrate positional cues to prime cambial growth.
    Nature, 2019. 565(7740): p. 490-494
    [PMID:30626969]