PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30190.m011101
Common NameLOC8272500, RCOM_1682970
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family TALE
Protein Properties Length: 302aa    MW: 33689.9 Da    PI: 6.7066
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30190.m011101genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.68.9e-082512842154
                    HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    k +yp+++++++L +++gL+ +q+ +WF N+R +
  30190.m011101 251 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 284
                    469*****************************87 PP

2ELK25.43.2e-09205226122
            ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                    ELK +L++++++++ ++++E++
  30190.m011101 205 ELKIELKQGFKSRIEDVREEIL 226
                    9*******************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.1E-193983IPR005540KNOX1
PfamPF037909.8E-184182IPR005540KNOX1
SMARTSM012561.2E-2294149IPR005541KNOX2
PfamPF037915.6E-1797148IPR005541KNOX2
PROSITE profilePS512139.132205225IPR005539ELK domain
PROSITE profilePS5007111.677225288IPR001356Homeobox domain
SuperFamilySSF466894.06E-16227292IPR009057Homeodomain-like
SMARTSM003891.4E-10227292IPR001356Homeobox domain
CDDcd000864.02E-11228289No hitNo description
Gene3DG3DSA:1.10.10.607.1E-25232290IPR009057Homeodomain-like
PfamPF059201.0E-17245284IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MQEPNLGMMG SGSSGSALGG LSSGGGGGGG GEVSGDQTRQ LKAEIANHPL YEQLLSAHVS  60
CLRVATPIDQ LPLIDAQLSQ SHHLIRSYAS QHPHPLSPHE RQELDNFLAQ YLIVLCSFKD  120
QLQQHVRVHA VEAVMACREI ENTLHALTGV TLGEGTGATM SDDEDDLQMD FSLDQSGADG  180
HDLMGFGPLL PTESERSLME RVRQELKIEL KQGFKSRIED VREEILRKRR AGKLPGDTTT  240
VLKNWWQQHS KWPYPTEDDK AKLVEETGLQ LKQINNWFIN QRKRNWHSNS QSVTSLKSKR  300
KR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-12228284864Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1281301RKRNWHSNSQSVTSLKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30190.m011101
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002509684.10.0homeobox protein HD1
SwissprotQ9FPQ81e-173KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLB9RC000.0B9RC00_RICCO; Homeobox protein knotted-1, putative
STRINGXP_002509684.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63483450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-171KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]