PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30174.m009083
Common NameRCOM_1620070
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family YABBY
Protein Properties Length: 193aa    MW: 21286.4 Da    PI: 9.3992
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30174.m009083genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY146.92e-45101522163
          YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvs 97 
                    d++  se++Cyv+CnfCnt+lav +P + l+ +vtv+CGhC++l  ++ +           l+ +  +++      + +++ s  +k +s+s+s  
  30174.m009083  10 DLVPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTR---------PPLQGQCLDHQ-----LTLQSFFSDLKKGQSSSSSS- 90 
                    77899*************************************97553322.........22222222222.....22222322222222222222. PP

          YABBY  98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163
                        s++++  +p++p v++PPek+ r Psaynrf+keeiqrika+nP+i hreafs+aaknWa +
  30174.m009083  91 ----STSSEPLSPKAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSTAAKNWARY 152
                    ....3445667899999***********************************************76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046905.2E-5514152IPR006780YABBY protein
SuperFamilySSF470951.44E-896150IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.104.0E-5106151IPR009071High mobility group box domain
CDDcd013901.01E-5113149No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010254Biological Processnectary development
GO:0010582Biological Processfloral meristem determinacy
GO:0048479Biological Processstyle development
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MNLEEKVTMD LVPPSEHLCY VRCNFCNTVL AVGIPCKRLL DTVTVKCGHC SNLSFLSTRP  60
PLQGQCLDHQ LTLQSFFSDL KKGQSSSSSS STSSEPLSPK APFVVKPPEK KHRLPSAYNR  120
FMKEEIQRIK AANPEIPHRE AFSTAAKNWA RYIPNSTAGS VSGSSCNTVS KSSLPRHIFL  180
DINKSWGFIS GLS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00220DAPTransfer from AT1G69180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015583321.11e-129PREDICTED: protein CRABS CLAW
SwissprotQ8L9252e-68CRC_ARATH; Protein CRABS CLAW
SwissprotQ76EJ03e-68YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLB9REB61e-142B9REB6_RICCO; Protein CRABS CLAW, putative
STRINGVIT_01s0011g00140.t012e-97(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102593040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.12e-68YABBY family protein