PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30174.m008898
Common NameLOC8270648, RCOM_1612280
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family LBD
Protein Properties Length: 247aa    MW: 25434.9 Da    PI: 8.1659
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30174.m008898genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.66.8e-41271271100
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                    +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l+ael+
  30174.m008898  27 PCGACKFLRRKCVPGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELS 122
                    7***********************9989******************************************************************** PP

         DUF260  96 llkee 100
                    +l+++
  30174.m008898 123 YLQAH 127
                    99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.04626128IPR004883Lateral organ boundaries, LOB
PfamPF031956.4E-4027125IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MSASANPSCS GGSGGVGGGG SSSSGGPCGA CKFLRRKCVP GCIFAPYFDS EQGAAHFAAV  60
HKVFGASNVS KLLLHIPVHK RLDAVVTICY EAQARLRDPV YGCVAHIFAL QQQVVNLQAE  120
LSYLQAHLAT LELPSPPPPP PPQSLVPPPP LSIADLPSAS SVPATYDLSS LFDPMTQPSP  180
SWAMQQRQMD PRQFGGGSSL GSSSATIGGC GGGDLHSLAR ELLHRHASPP RGSVPCSGTL  240
SSPSISK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00314DAPTransfer from AT2G45420Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002511730.11e-177PREDICTED: LOB domain-containing protein 18
SwissprotO221318e-87LBD18_ARATH; LOB domain-containing protein 18
TrEMBLB9RDE11e-177B9RDE1_RICCO; LOB domain-containing protein, putative
STRINGVIT_15s0048g00830.t017e-99(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.11e-82LOB domain-containing protein 18