PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30174.m008818
Common NameRCOM_1610150
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 272aa    MW: 30252.2 Da    PI: 5.2749
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30174.m008818genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00021426123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   +kC+ C ksFs+   L  H+r+H
  30174.m008818  4 HKCKLCLKSFSNGRALGGHMRSH 26
                   79********************9 PP

2zf-C2H213.70.00019122144123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C+ C+k+F++   L  H  +H
  30174.m008818 122 YRCETCKKVFKSYQALGGHRASH 144
                    9************9999998887 PP

3zf-C2H213.20.00027179201123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++Cp+C ++Fs+   L  H r+H
  30174.m008818 179 HECPYCFRVFSSGQALGGHKRSH 201
                    79******************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.5E-7326No hitNo description
PROSITE profilePS5015710.699431IPR007087Zinc finger, C2H2
SMARTSM003550.03426IPR015880Zinc finger, C2H2-like
PfamPF139125.3E-8427IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576673.5E-7117144No hitNo description
PROSITE profilePS5015710.076122149IPR007087Zinc finger, C2H2
SMARTSM003550.026122144IPR015880Zinc finger, C2H2-like
PfamPF139124.4E-11122146IPR007087Zinc finger, C2H2
PROSITE patternPS000280124144IPR007087Zinc finger, C2H2
SuperFamilySSF576677.37E-5176202No hitNo description
PROSITE profilePS501579.286179201IPR007087Zinc finger, C2H2
SMARTSM003550.17179201IPR015880Zinc finger, C2H2-like
PfamPF139125.5E-11179201IPR007087Zinc finger, C2H2
PROSITE patternPS000280181201IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MEKHKCKLCL KSFSNGRALG GHMRSHMLNL PVLQKQQQHP PEEDDDDDRP PTIQLGENTE  60
SASSSSSSSS SEEEDKPQHH QEQEQEQDDQ EEEEEEEAER SIEETDESDE FKSCKTRIKG  120
KYRCETCKKV FKSYQALGGH RASHKKLKLH SPIQERELET ENNNNNAATS GSVSVKKIHE  180
CPYCFRVFSS GQALGGHKRS HVVTGIATAA AATTTTRAIA TATPARSSIA TKVEDNLNLI  240
DLNLPAPIDE DDLSQVELSA VSDAEFVNHI KR
Cis-element ? help Back to Top
SourceLink
PlantRegMap30174.m008818
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025015903.13e-97zinc finger protein ZAT9
TrEMBLB9RD620.0B9RD62_RICCO; Zinc finger protein, putative
STRINGXP_002511651.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-30C2H2-like zinc finger protein