PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30170.m014115
Common NameRCOM_1596030
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 247aa    MW: 26773 Da    PI: 7.3031
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30170.m014115genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-194291255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    ykGVr++  +g+WvAeIr+p   + r +r +lg+f+t  eAa a++aa++kl+g
  30170.m014115 42 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSHEAAMAYDAAARKLYG 91
                   69****999.**********8...3.35*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.06E-2241101No hitNo description
SuperFamilySSF541711.44E-214299IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-3042100IPR001471AP2/ERF domain
PfamPF008473.3E-144291IPR001471AP2/ERF domain
PROSITE profilePS5103222.4314299IPR001471AP2/ERF domain
SMARTSM003808.0E-3742105IPR001471AP2/ERF domain
PRINTSPR003677.3E-104354IPR001471AP2/ERF domain
PRINTSPR003677.3E-106581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MMSKSTVSTV LGEKKQLKKP AQASSRKGCM RGKGGPENAL CTYKGVRQRT WGKWVAEIRE  60
PNRGARLWLG TFDTSHEAAM AYDAAARKLY GPEAKLNLPE LHSSKNKVPA SSANSQASQL  120
GNRSQSQILH NSGATCPSSG PIIRANNLVT PAYSYDSIVS FPNANVDCCN ANVAESNEAS  180
IYGQNQEGAG INELWENLNV NLPLFDDSIW AEAAMSIDFP AMEDPGIFAS NLMDGTNWDA  240
LQTPWCK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-174399360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30170.m014115
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002510462.20.0dehydration-responsive element-binding protein 2D
SwissprotQ9LQZ24e-57DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBLB9R8190.0B9R819_RICCO; Dehydration-responsive element-binding protein 2G, putative
STRINGXP_002510462.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.16e-59ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]