PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30147.m014419
Common NameLOC8275502, RCOM_1504040
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 549aa    MW: 60114.4 Da    PI: 5.9294
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30147.m014419genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.4e-11365407754
                    HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
            HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                    ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  30147.m014419 365 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 407
                    79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.58358407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-16361428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-14364413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-9364407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.39E-12365411No hitNo description
Gene3DG3DSA:4.10.280.109.2E-16365420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550219.16E-6476548No hitNo description
CDDcd048739.95E-8478538No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MLSGLNGTVW IEDNREQRDS TTNNNSSNIN NSCCGVIESN KEDMASLSTF KSMLEVEDDW  60
YVANTTSIHS HQDSIRDITF SPNLGDPDNL LLHSVDSSSS CSPNSSVFNN LDPSHVHYFM  120
HPKPTLSSLL NVVPSNIPLD HGFDLGEIGF LENHTAANAT TTNVSSMMNR GGGILGNFTD  180
LNSNNQISTS NFCSDPPFST TSMLQLPENA SGFTGFRGFN ESSGNSLFLN RSKMLRPLET  240
FPSMGAQPTL FQKRAALRKN FGDNGGNLGS LTGIEIDKGK RELTLMGEEN EKKRKLGNVI  300
DDTFEDVSID GSGLNYDSDE FTENTKIEEI GKNGGNSSNA NSDITGCGGG DQKGKKKGLP  360
AKNLMAERRR RKKLNDRLYM LRSVVPKISK MDRASILGDA IEYLKELLQR INDLHNELES  420
TPPGSSMTPT TSFHPLTPTP SALPSRIKDK LCPSPLPSPN GQPARVEVRL REGRAVNIHM  480
FCGRRPGLLL SIMRALDNLG LDIQQAVISC FNGFAMDIFR AEQCKEGQDV HPEQIKAVLL  540
DSAGYHGMM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1354372KKKGLPAKNLMAERRRRKK
2366373ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002511101.10.0PREDICTED: transcription factor ICE1
SwissprotQ9LSE21e-140ICE1_ARATH; Transcription factor ICE1
TrEMBLB9RA760.0B9RA76_RICCO; Transcription factor ICE1, putative
STRINGPOPTR_0015s11650.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-135bHLH family protein