PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30131.m006993
Common NameRCOM_1445470
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 428aa    MW: 46431.1 Da    PI: 4.7713
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30131.m006993genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-11244286754
                    HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
            HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                    ++ErrRR+r+N+++  Lr+++Pk +      K++ a+iL  A++Y+k+L
  30131.m006993 244 MAERRRRKRLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 286
                    79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.853237286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.02E-16240305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-14243292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-9243286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.37E-6244290No hitNo description
Gene3DG3DSA:4.10.280.103.3E-15244299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048734.48E-7357417No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MVLNGVVWME GGAVRQQEEE AEEEEEAVSS WTRNTNDPQE PKEEDLGIIS ATSLSTLKSM  60
LETDCGSESE FQATQLIPLP DNGVGIANGG FGNVGLEGFD GSSGNMFYSK AKVLKPLEVG  120
SGSHSPPTLF QKRAMLRHSD DKLGSLEISG LRCGVGGEIG GGNWGEIERK RKRSDEEGEI  180
EEVSFDVSGF NYDSDENNGD DGKVEESVKN NGESNSIANS TVTGGGGSGD QKGKKKGMPA  240
KNLMAERRRR KRLNDRLYML RSVVPKISKM DRASILGDAI DYLKELLQRI NDLHNELEST  300
PPGSLLPQSS SFHPLTPTPP TLPCRVKEEL CPSSLPGPKS QPARVEVRVR EGRAVNIHMF  360
SAGRPGLLLS TMRALDNLGL DIQQAVISCF NGFALDVFRA EQCREGQDVL PEQIKAVLLD  420
SAGFHGLM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233251KKKGMPAKNLMAERRRRKR
2245252ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015570780.10.0PREDICTED: transcription factor ICE1
SwissprotQ9LSE21e-138ICE1_ARATH; Transcription factor ICE1
TrEMBLB9RGZ20.0B9RGZ2_RICCO; Putative uncharacterized protein
STRINGVIT_14s0068g01200.t011e-151(Vitis vinifera)
STRINGPOPTR_0015s11650.11e-150(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-113bHLH family protein