PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30128.m008750
Common NameRCOM_1431050
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NF-YC
Protein Properties Length: 247aa    MW: 27592.2 Da    PI: 7.7012
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30128.m008750genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC176.62.4e-55771801101
          NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 
                    ql+sfw++q   ++k+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflv
  30128.m008750  77 QLQSFWTNQyhdVDKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLV 172
                    89*******99999********************************************************************************** PP

          NF-YC  94 divprdel 101
                    divpr++l
  30128.m008750 173 DIVPREDL 180
                    *****987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.77E-3268171IPR009072Histone-fold
PfamPF008081.2E-2199162IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.108.9E-38100177IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MDQQGHGQPP AIGVVSTAGQ MPYGTNPYPS NQLSSTQNPG SVGAIQSAGQ PTGAQLAQHQ  60
LAYQQIHHQQ QQQLQQQLQS FWTNQYHDVD KVTDFKNHSL PLARIKKIMK ADEDVRMISA  120
EAPVVFARAC EMFILELTLR SWNHTEENKR RTLQKNDIAA AITRTDIFDF LVDIVPREDL  180
KDEVLSSISR GTMPVGGPEK GGPQLQIVPS RLELKSSKTL CIEYILNGVS DRRLSRLSRS  240
FGYLLDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_C7e-4192177994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4csr_B7e-4192177994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149155RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015570347.11e-144PREDICTED: nuclear transcription factor Y subunit C-9
SwissprotQ8L4B21e-81NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLB9RF360.0B9RF36_RICCO; Ccaat-binding transcription factor, putative
STRINGVIT_14s0128g00250.t011e-105(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.42e-77nuclear factor Y, subunit C9