PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30099.m001672
Common NameLOC8268896, RCOM_1382330
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family M-type_MADS
Protein Properties Length: 217aa    MW: 24621.4 Da    PI: 10.5082
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30099.m001672genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.92.3e-221862549
                   SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
         SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                   n+sn qvtfskRr g++KKA+ELS+LC+ae+a+i+fs+  k++ +
  30099.m001672 18 NESNLQVTFSKRRSGLFKKASELSTLCGAEIAIIVFSPGKKVFSF 62
                   89************************************9999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.221666IPR002100Transcription factor, MADS-box
SMARTSM004327.2E-31665IPR002100Transcription factor, MADS-box
CDDcd002654.43E-33775No hitNo description
SuperFamilySSF554555.89E-26782IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-19828IPR002100Transcription factor, MADS-box
PfamPF003192.2E-241762IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-192843IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-194364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009960Biological Processendosperm development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MAKRSKGRQK IDMVKMPNES NLQVTFSKRR SGLFKKASEL STLCGAEIAI IVFSPGKKVF  60
SFGHPGVEVV IDRFLSRNPP QNSPTMQLIE AHRNASVREL NAQLTQVLTQ LEMERKRGEE  120
LNQMRKTGQN RCWWEAPIDD LTMPQLEQLR MSLEQLKKNV AMQADKLLIQ NAQSQQFFAS  180
SSTAPPPPLP NNNFMFNIPN MGTLPGYNNF GYGRGFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A1e-17791186Myocyte-specific enhancer factor 2A
3kov_B1e-17791186Myocyte-specific enhancer factor 2A
3kov_I1e-17791186Myocyte-specific enhancer factor 2A
3kov_J1e-17791186Myocyte-specific enhancer factor 2A
3p57_A1e-17791186Myocyte-specific enhancer factor 2A
3p57_B1e-17791186Myocyte-specific enhancer factor 2A
3p57_C1e-17791186Myocyte-specific enhancer factor 2A
3p57_D1e-17791186Myocyte-specific enhancer factor 2A
3p57_I1e-17791186Myocyte-specific enhancer factor 2A
3p57_J1e-17791186Myocyte-specific enhancer factor 2A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30099.m001672
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002522085.11e-161agamous-like MADS-box protein AGL62
SwissprotQ9FKK26e-68AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLB9S7W91e-160B9S7W9_RICCO; Mads box protein, putative
STRINGXP_002522085.11e-160(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-69AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]