PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30068.m002615
Common NameLOC8288881, RCOM_1314720
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family B3
Protein Properties Length: 406aa    MW: 44897 Da    PI: 7.597
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30068.m002615genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.11.3e-31103207199
                    EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sef 90 
                    f+kv tpsdv+k++rlv+pk++ae++    ++ + ++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  + 
  30068.m002615 103 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNDKGLLLNFEDKTGKAWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRGvGEaAKD 198
                    89***************************9555568889************************************************655888888 PP

                    ..EEEEE-S CS
             B3  91 elvvkvfrk 99 
                    +l++ ++r+
  30068.m002615 199 RLYIDWRRR 207
                    999999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.6E-4197215IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-2999191IPR015300DNA-binding pseudobarrel domain
CDDcd100177.14E-27101190No hitNo description
PROSITE profilePS5086314.494103208IPR003340B3 DNA binding domain
PfamPF023626.7E-29103207IPR003340B3 DNA binding domain
SMARTSM010191.5E-23103208IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MEIGSAAGII STEEEQMSKG KHLPFSYSSS SSPSSSSSQH KPHHLLALSQ IYDKNHHPQV  60
GSWLGSKYDP EQEDAGSAAG IFEEEEGSGE GECGVVIQKE HMFDKVVTPS DVGKLNRLVI  120
PKQHAEKYFP LDSSTNDKGL LLNFEDKTGK AWRFRYSYWN SSQSYVMTKG WSRFVKDKKL  180
DAGDIVSFQR GVGEAAKDRL YIDWRRRPDG PHHQPTHRHQ QHHLSSIPWS PLLMRPPPVP  240
RDHFHLSNPN YYNSSGGGGG ASAYGFGYGY NSSNNYNYNS NVGSSNSGTI IYMRSPQQAG  300
MVQWQQAAAS SGGFMEPMVF ESVPVVQGKA AAKRLRLFGV NMDCPISDSD HECDKLSTST  360
PIPAMAAALQ QPSHHPLQLR LYNGTPLPSP QFLHKGKSSM SLDLDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-66992084114B3 domain-containing transcription factor NGA1
5os9_B2e-66992084114B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30068.m002615
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002518948.10.0B3 domain-containing transcription factor NGA1 isoform X2
SwissprotO827992e-79NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLB9RYX90.0B9RYX9_RICCO; Transcription factor, putative
STRINGXP_002518948.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.18e-67B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,LapÄ—nas K,KauneckaitÄ— K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]