PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30061.m000294
Common NameLOC8278994, RCOM_1293650
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 329aa    MW: 37198 Da    PI: 7.6788
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30061.m000294genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.33.1e-06169188120
                    EEETTTTEEESSHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                    ++Cp C k+F+r  nL+ H+
  30061.m000294 169 FSCPVCLKTFNRYNNLQMHM 188
                    89*****************9 PP

2zf-C2H216.62.3e-05253275123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    + C +CgksF  k + ++H +++
  30061.m000294 253 FMCRKCGKSFAVKGDWRTHEKNC 275
                    89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.41E-5162191No hitNo description
SMARTSM003550.18169191IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-5169188IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.18169196IPR007087Zinc finger, C2H2
PROSITE patternPS000280171191IPR007087Zinc finger, C2H2
SuperFamilySSF576671.41E-6237273No hitNo description
Gene3DG3DSA:3.30.160.604.8E-6249273IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035537253273IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.787253273IPR007087Zinc finger, C2H2
SMARTSM00355160279302IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MPDPCSNLFS GWFNLMALHP HYTGFTTSYS NPSPTNFNIY SNNNIFNNKS SFQSQPYPSL  60
TSQKEPPHLV EYLSPPRQQE EHHECSSSSM EEEKNMKRDS DNDGETLTVA LNIGLPSPTS  120
DLGPRVSPPL IEVEEGNAVS GYPLPIQKLS KGQFWIPSPA QILIGPTQFS CPVCLKTFNR  180
YNNLQMHMWG HGSQYRKGPD SLRGTQPTAM LRLPCYCCAP GCKHNIDHPR ARPLKDFRTL  240
QTHYKRKHGI KPFMCRKCGK SFAVKGDWRT HEKNCGKVWY CVCGSDFKHK RSLKDHIKAF  300
GHGHAALGID CLEEEDEPAS EIELDEESL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30061.m000294
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002526768.10.0zinc finger protein WIP2
SwissprotQ9SVY11e-121ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLB9SL990.0B9SL99_RICCO; TRANSPARENT TESTA 1 protein, putative
STRINGXP_002526768.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-122C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]