PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29991.m000642
Common NameLOC8267006, RCOM_1186440
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 310aa    MW: 33515.1 Da    PI: 4.2495
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29991.m000642genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00043284307123
                    EEETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                    ++C+ C +sF +   L++H +  H
  29991.m000642 284 FSCNSCERSFGSDAALQSHSKAkH 307
                    89*****************88767 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF030661.9E-73183No hitNo description
PROSITE profilePS5015711.635284310IPR007087Zinc finger, C2H2
PROSITE patternPS000280286307IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MEFWGVEIKA GETLKVEPNP ESLIHLSQAA LGESKKEKGN ESVPLYVKVD NKKIILGTLS  60
QENFPQIAFD IVFEKEVELS HNWKNGSVYL SGYQTPLPEE DDMFSEEESD DEEPLPLVNA  120
DNGGIQLAGT QKAAAKSNIA KPESSTKQKA KPVQPSKAEE ASDDDDESDD DDDDEDDDED  180
ESDDEDESEE GMSVDEDSDD EGDSESEDEE TPKKADKGKK RQNDSAVKTP VSSKKAKLIT  240
PQKTADGKKG GHTATPHPAK GAKASANGNT PKPQTQTPKS GGKFSCNSCE RSFGSDAALQ  300
SHSKAKHSSK
Cis-element ? help Back to Top
SourceLink
PlantRegMap29991.m000642
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002527449.10.0histone deacetylase HDT1 isoform X1
TrEMBLB9SN800.0B9SN80_RICCO; Histone deacetylase 2a, putative
STRINGXP_002527449.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10253067
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.26e-36histone deacetylase 3