PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29929.m004534
Common NameRCOM_1077400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family FAR1
Protein Properties Length: 256aa    MW: 29281.2 Da    PI: 7.8994
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29929.m004534genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.83.1e-2272163190
           FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                    +fY +YA  +GF +r++++++   +g+++++t+vCs+eg++++++++     ++ + r + r+gCka++  kk++ ++kw +++l +eH+H+l+
  29929.m004534  72 EFYGKYAMCMGFLTRINRTSQ--LDGSVISKTLVCSREGFQRPNNRNdmtYIRSPKARGSIRVGCKARVSFKKKQdSEKWFISNLIKEHTHPLN 163
                    6***************97655..5********************999665556777999***************999***************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-1972163IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MLSCILNSFV AVDSERNPDI ATKRNNSIDS NPQISNDCGA NESNVDAVSE PESTLDEPYV  60
GQKFESEAAA HEFYGKYAMC MGFLTRINRT SQLDGSVISK TLVCSREGFQ RPNNRNDMTY  120
IRSPKARGSI RVGCKARVSF KKKQDSEKWF ISNLIKEHTH PLNDSVFQKA RISQVSGDDK  180
RIHELTQELM MERKRSASLR EFINLLFNHI EEHTQGLSEK IQYIAEKLNL YIVMLNEAMR  240
KISPVPYNFF PFLELA
Cis-element ? help Back to Top
SourceLink
PlantRegMap29929.m004534
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015572119.11e-171protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBLB9RM300.0B9RM30_RICCO; Uncharacterized protein
STRINGXP_002514799.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24533072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.26e-44FAR1 family protein