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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29916.m000516 | ||||||||
Common Name | RCOM_1060190 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | C2H2 | ||||||||
Protein Properties | Length: 109aa MW: 12170.4 Da PI: 5.8447 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.4 | 0.00024 | 4 | 26 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+++F + L H++ H 29916.m000516 4 HKCKLCTRTFANGRALGGHMKAH 26 79******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 3.6E-7 | 3 | 27 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.59E-5 | 3 | 29 | No hit | No description |
PROSITE profile | PS50157 | 10.45 | 4 | 31 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence Send to blast |
MERHKCKLCT RTFANGRALG GHMKAHLATL PLPPRTTAIH QQQQQLGAES ASSSYSSSGE 60 EHEHEHEQEM NSFEVEEKAL VYGLRENPKR NLNLPAPIDD DDYSVVSDA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29916.m000516 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015580700.1 | 1e-40 | zinc finger protein ZAT4 | ||||
TrEMBL | B9SSE6 | 4e-76 | B9SSE6_RICCO; Uncharacterized protein | ||||
STRING | XP_002528915.1 | 7e-77 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF767 | 34 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02030.1 | 4e-13 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | 29916.m000516 |