PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29916.m000516
Common NameRCOM_1060190
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 109aa    MW: 12170.4 Da    PI: 5.8447
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29916.m000516genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00024426123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   +kC+ C+++F +   L  H++ H
  29916.m000516  4 HKCKLCTRTFANGRALGGHMKAH 26
                   79******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.6E-7327IPR007087Zinc finger, C2H2
SuperFamilySSF576672.59E-5329No hitNo description
PROSITE profilePS5015710.45431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MERHKCKLCT RTFANGRALG GHMKAHLATL PLPPRTTAIH QQQQQLGAES ASSSYSSSGE  60
EHEHEHEQEM NSFEVEEKAL VYGLRENPKR NLNLPAPIDD DDYSVVSDA
Cis-element ? help Back to Top
SourceLink
PlantRegMap29916.m000516
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015580700.11e-40zinc finger protein ZAT4
TrEMBLB9SSE64e-76B9SSE6_RICCO; Uncharacterized protein
STRINGXP_002528915.17e-77(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.14e-13C2H2-like zinc finger protein