PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29908.m006047
Common NameLOC8281661, RCOM_1036390
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 285aa    MW: 31978.5 Da    PI: 9.0315
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29908.m006047genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65e-06124143120
                    EEETTTTEEESSHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                    y+C+ C k+F+r  nL+ H+
  29908.m006047 124 YSCHVCFKTFNRYNNLQMHM 143
                    99*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.11E-5117146No hitNo description
Gene3DG3DSA:3.30.160.601.8E-4124143IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.242124151IPR007087Zinc finger, C2H2
PROSITE patternPS000280126146IPR007087Zinc finger, C2H2
SuperFamilySSF576673.54E-5190228No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009813Biological Processflavonoid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MEFSDVVFNP STPLVSSSSS STSNKKHTIG IEPLDLFPST SYSSLEPMPL LSSLISSEEQ  60
AFSSENPKES IDRDKEDVTV ALHIGLPDYS QISVSSSTKG NTNVAAKQYW IPTPEQILIG  120
FTHYSCHVCF KTFNRYNNLQ MHMWGHGSQY RRGPESLKGT QPRAMLGIPC YCCAEGCKNN  180
IQHPKAKPLK DFRTLQTHYK RKHGLKPFMC RKCGKFLAVK GDWRTHEKNC GKRWLCICGS  240
DFKHKRSLKD HIKAFGSTCH GPFLPIPPSS SFDGFGLFDS TFALV
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269|PubMed:11782451, ECO:0000269|PubMed:21477081}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29908.m006047
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002513936.10.0protein TRANSPARENT TESTA 1
SwissprotQ8VWG31e-110TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBLB9RJL70.0B9RJL7_RICCO; TRANSPARENT TESTA 1 protein, putative
STRINGXP_002513936.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.11e-109C2H2 family protein
Publications ? help Back to Top
  1. Lian J, et al.
    Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus.
    Plant Sci., 2017. 254: p. 32-47
    [PMID:27964783]