PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29844.m003332
Common NameLOC8271587, RCOM_0913480
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NF-YC
Protein Properties Length: 246aa    MW: 27516 Da    PI: 5.2575
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29844.m003332genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC177.81e-55711732101
          NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvd 94 
                    l+sfw++q   ie+++dfknh+lPlarikki+kadedv+misaeaPv++s+ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflvd
  29844.m003332  71 LQSFWANQyqdIEQTSDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFSRACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVD 166
                    89*****9999************************************************************************************* PP

          NF-YC  95 ivprdel 101
                    ivpr++l
  29844.m003332 167 IVPREDL 173
                    ****987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.48E-3267164IPR009072Histone-fold
Gene3DG3DSA:1.10.20.106.3E-3883156IPR009072Histone-fold
PfamPF008082.1E-2192155IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MDQHGHGQPP AASVVGTTAP VPYGMSSYQP NQMMGPATTG SLQSATSQSQ LAQHQFAYQH  60
IPQQQQLQQE LQSFWANQYQ DIEQTSDFKN HSLPLARIKK IMKADEDVRM ISAEAPVIFS  120
RACEMFILEL TLRSWNHTEE NKRRTLQKND IAAAITRTDI FDFLVDIVPR EDLKDEVLAS  180
VPRGSLPVGG TAEAIPYYYM QPQFPPQVVA SGMTAGKPVA DQILYDQQSR PYVAQPMWAQ  240
QPPPDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C3e-407117019119HapE
4g92_C3e-407117019119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142148RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2158491e-155AC215849.1 Populus trichocarpa clone POP023-L07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015573478.10.0PREDICTED: nuclear transcription factor Y subunit C-9
RefseqXP_002517180.10.0PREDICTED: nuclear transcription factor Y subunit C-9
RefseqXP_015573477.10.0PREDICTED: nuclear transcription factor Y subunit C-9
SwissprotQ8L4B23e-81NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLB9RTW10.0B9RTW1_RICCO; Ccaat-binding transcription factor, putative
STRINGPOPTR_0010s03730.11e-133(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.43e-76nuclear factor Y, subunit C9