PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29838.m001672
Common NameRCOM_0885140
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family M-type_MADS
Protein Properties Length: 207aa    MW: 23464.1 Da    PI: 10.706
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29838.m001672genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.33.1e-211659245
                   ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
         SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                   +i+ +snr vtfskRr g++KKA+ELS+LC+ae+++i+fs+  +
  29838.m001672 16 KISKESNRLVTFSKRRYGVFKKASELSTLCGAEISIIVFSPGKR 59
                   5999************************************9765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.801767IPR002100Transcription factor, MADS-box
SMARTSM004327.6E-27766IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-24881IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-18929IPR002100Transcription factor, MADS-box
PfamPF003194.7E-221663IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-182944IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-184465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MSKLTGKGRQ RIEMVKISKE SNRLVTFSKR RYGVFKKASE LSTLCGAEIS IIVFSPGKRA  60
FSFGNPSVET VVDCFLSNKP PRISGSLQLI EAHRSSRLRE LNMLLTKKKR GEELDRIRKA  120
SQAQHWWESP IEELHLTQLK QLKASLEMLR QNVGKQAEQL LFQATNSHQF YAPTTSNRVL  180
PFDPKNGGFN TTLMPSQYPN LGCGGFY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29838.m001672
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021625068.15e-94agamous-like MADS-box protein AGL62
SwissprotQ9FKK22e-50AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLB9S9G61e-152B9S9G6_RICCO; Mads box protein, putative
STRINGXP_002522635.11e-153(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-53AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]