PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29801.m003176
Common NameLOC8275294, RCOM_0813280
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bZIP
Protein Properties Length: 433aa    MW: 47029.9 Da    PI: 10.3634
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29801.m003176genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.62.8e-13355401551
                    CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 
                    +r rr++kNRe+A rsR+RK+a++ eLe +v++L++ N++L+ +  e
  29801.m003176 355 RRHRRMIKNRESAARSRARKQAYTLELEAEVAKLKEMNQELQRKQAE 401
                    689************************************99865444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.7E-11350416IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.484353405IPR004827Basic-leucine zipper domain
PfamPF001701.1E-11355405IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.48E-9355403No hitNo description
Gene3DG3DSA:1.20.5.1702.7E-13355405No hitNo description
CDDcd147072.06E-24355407No hitNo description
PROSITE patternPS000360358373IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MGSHLNFRNF GNASYGEGSG AKPSGISPLA RQGSIYSLTF DEFQNTWGGG LGKDLGSMNM  60
DELLKNIWTA EETQAMTNSV VGVDGSAPGG NLQRQGSLTL PRTLSQKTVD EVWKDLVKES  120
SGVKDRSNVG ANLPQRQQTL GEMTLEEFLA KAGVVREDTQ LIGRPNNGGF FDELSRLKNA  180
NNNNSGLPLE FQQPNRNNAL MGSQLVETNN NLVAAQPLSA GGIRSSQPLP QQHQMHLNQP  240
QPQQQQALFP KSANVAFASP VQLVNNAQLA SPGARGSAVG IADPSLNNNL VHGGGIGIVG  300
LGTRDVKVAT GSPANQISPD MMAKSGTDTP LLSPVPNMFG RGRKASAALE KVIERRHRRM  360
IKNRESAARS RARKQAYTLE LEAEVAKLKE MNQELQRKQA EFMEKQKNEF LETINRQWGS  420
KRPCLQRTLT GPW
Functional Description ? help Back to Top
Source Description
UniProtBinds to the ABA-responsive element (ABRE). Mediates stress-responsive ABA signaling. {ECO:0000269|PubMed:11884679, ECO:0000269|PubMed:15361142}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00038PBMTransfer from AT4G34000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29801.m003176
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, salt, abscisic acid (ABA). {ECO:0000269|PubMed:10636868, ECO:0000269|PubMed:16284313}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015574413.10.0bZIP transcription factor TRAB1
SwissprotQ9M7Q31e-118AI5L6_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 6
TrEMBLB9RYH30.0B9RYH3_RICCO; DNA binding protein, putative
STRINGXP_002518757.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19623481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34000.21e-106abscisic acid responsive elements-binding factor 3
Publications ? help Back to Top
  1. Zhao Q, et al.
    Regulation and function of Arabidopsis AtGALK2 gene in abscisic acid response signaling.
    Mol. Biol. Rep., 2018.
    [PMID:24078097]
  2. Bao Y, et al.
    The tumor necrosis factor receptor-associated factor (TRAF)-like family protein SEVEN IN ABSENTIA 2 (SINA2) promotes drought tolerance in an ABA-dependent manner in Arabidopsis.
    New Phytol., 2014. 202(1): p. 174-87
    [PMID:24350984]
  3. González-Grandío E,Cubas P
    Identification of gene functions associated to active and dormant buds in Arabidopsis.
    Plant Signal Behav, 2014. 9(2): p. e27994
    [PMID:24518068]
  4. Xie M, et al.
    AtWNK9 is regulated by ABA and dehydration and is involved in drought tolerance in Arabidopsis.
    Plant Physiol. Biochem., 2014. 77: p. 73-83
    [PMID:24561249]
  5. Kim EY,Seo YS,Park KY,Kim SJ,Kim WT
    Overexpression of CaDSR6 increases tolerance to drought and salt stresses in transgenic Arabidopsis plants.
    Gene, 2014. 552(1): p. 146-54
    [PMID:25234727]
  6. Zhang H, et al.
    The RING finger ubiquitin E3 ligase SDIR1 targets SDIR1-INTERACTING PROTEIN1 for degradation to modulate the salt stress response and ABA signaling in Arabidopsis.
    Plant Cell, 2015. 27(1): p. 214-27
    [PMID:25616872]
  7. Baek D, et al.
    A Role for Arabidopsis miR399f in Salt, Drought, and ABA Signaling.
    Mol. Cells, 2016. 39(2): p. 111-8
    [PMID:26674968]
  8. Bao Y, et al.
    Overexpression of the NDR1/HIN1-Like Gene NHL6 Modifies Seed Germination in Response to Abscisic Acid and Abiotic Stresses in Arabidopsis.
    PLoS ONE, 2016. 11(2): p. e0148572
    [PMID:26849212]
  9. Gao S, et al.
    ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis.
    Mol Plant, 2016. 9(9): p. 1272-1285
    [PMID:27373216]
  10. Li X, et al.
    Dual Function of NAC072 in ABF3-Mediated ABA-Responsive Gene Regulation in Arabidopsis.
    Front Plant Sci, 2016. 7: p. 1075
    [PMID:27486475]
  11. Wang Z, et al.
    Overexpressing Arabidopsis ABF3 increases tolerance to multiple abiotic stresses and reduces leaf size in alfalfa.
    Plant Physiol. Biochem., 2016. 109: p. 199-208
    [PMID:27721135]
  12. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  13. Kerr TCC, et al.
    Ectopic expression of two AREB/ABF orthologs increases drought tolerance in cotton (Gossypium hirsutum).
    Plant Cell Environ., 2018. 41(5): p. 898-907
    [PMID:28098349]
  14. Lyzenga WJ,Sullivan V,Liu H,Stone SL
    The Kinase Activity of Calcineurin B-like Interacting Protein Kinase 26 (CIPK26) Influences Its Own Stability and that of the ABA-regulated Ubiquitin Ligase, Keep on Going (KEG).
    Front Plant Sci, 2017. 8: p. 502
    [PMID:28443108]
  15. Song C,Kim T,Chung WS,Lim CO
    The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions.
    Mol. Cells, 2017. 40(8): p. 577-586
    [PMID:28756655]
  16. Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF
    Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions.
    Plant Mol. Biol., 2018. 97(1-2): p. 149-163
    [PMID:29680877]
  17. Kim HJ, et al.
    Confirmation of Drought Tolerance of Ectopically Expressed AtABF3 Gene in Soybean.
    Mol. Cells, 2018. 41(5): p. 413-422
    [PMID:29754472]